Class: IntermicrobialInteraction

Represents an interaction between microbial entities

classDiagram class IntermicrobialInteraction NamedThing <|-- IntermicrobialInteraction IntermicrobialInteraction : description IntermicrobialInteraction : evidence_type IntermicrobialInteraction : id IntermicrobialInteraction : method_type IntermicrobialInteraction --|> MethodType : method_type IntermicrobialInteraction : name IntermicrobialInteraction : participant_outcomes IntermicrobialInteraction --|> ParticipantOutcome : participant_outcomes IntermicrobialInteraction : participants IntermicrobialInteraction : reference IntermicrobialInteraction : sequence_id IntermicrobialInteraction : tax_id

Inheritance

NamedThing
- IntermicrobialInteraction

Slots

Name	Cardinality and Range	Description	Inheritance
participants	1..* String	Names of the microbial entities, with descriptions of any genetic manipulatio...	direct
tax_id	1..* NCBITaxId	NCBI Taxonomy identifiers at the relevant taxonomic level	direct
sequence_id	0..* recommended SequenceId	Accession to the matching sequence data (e	direct
evidence_type	1..1 String	Type of evidence used to determine the interaction using the Evidence and Con...	direct
method_type	0..* recommended MethodType	One or several of the types of methods used to determine the interaction	direct
reference	1..1 String	Persistent identifier (e	direct
participant_outcomes	0..* recommended ParticipantOutcome	Outcomes of each of the participants described in the interaction when known	direct
id	1..1 Uriorcurie	A unique identifier for a thing	NamedThing
name	0..1 String	A human-readable name for a thing	NamedThing
description	0..1 String	A human-readable description for a thing	NamedThing

Usages

used by	used in	type	used
IntermicrobialInteractionCollection	entries	range	IntermicrobialInteraction

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/FAIR-MI/miiid-schema

Mappings

Mapping Type	Mapped Value
self	miiid:IntermicrobialInteraction
native	miiid:IntermicrobialInteraction

LinkML Source

Direct

name: IntermicrobialInteraction
description: Represents an interaction between microbial entities
from_schema: https://w3id.org/FAIR-MI/miiid-schema
is_a: NamedThing
slots:
- participants
- tax_id
- sequence_id
- evidence_type
- method_type
- reference
- participant_outcomes

Induced

name: IntermicrobialInteraction
description: Represents an interaction between microbial entities
from_schema: https://w3id.org/FAIR-MI/miiid-schema
is_a: NamedThing
attributes:
  participants:
    name: participants
    description: Names of the microbial entities, with descriptions of any genetic
      manipulations performed.
    from_schema: https://w3id.org/FAIR-MI/miiid-schema
    rank: 1000
    multivalued: true
    alias: participants
    owner: IntermicrobialInteraction
    domain_of:
    - IntermicrobialInteraction
    range: string
    required: true
  tax_id:
    name: tax_id
    description: NCBI Taxonomy identifiers at the relevant taxonomic level. Novel
      taxa lacking identifiers are denoted by N/A.
    from_schema: https://w3id.org/FAIR-MI/miiid-schema
    rank: 1000
    multivalued: true
    alias: tax_id
    owner: IntermicrobialInteraction
    domain_of:
    - IntermicrobialInteraction
    range: NCBITaxId
    required: true
  sequence_id:
    name: sequence_id
    description: Accession to the matching sequence data (e.g., genome, marker gene
      sequence).
    from_schema: https://w3id.org/FAIR-MI/miiid-schema
    rank: 1000
    multivalued: true
    alias: sequence_id
    owner: IntermicrobialInteraction
    domain_of:
    - IntermicrobialInteraction
    range: SequenceId
    recommended: true
  evidence_type:
    name: evidence_type
    description: Type of evidence used to determine the interaction using the Evidence
      and Conclusion Ontology.
    from_schema: https://w3id.org/FAIR-MI/miiid-schema
    rank: 1000
    alias: evidence_type
    owner: IntermicrobialInteraction
    domain_of:
    - IntermicrobialInteraction
    range: string
    required: true
    pattern: '[^\:\n\r]+\:[^\:\n\r]+'
  method_type:
    name: method_type
    description: One or several of the types of methods used to determine the interaction.
    from_schema: https://w3id.org/FAIR-MI/miiid-schema
    rank: 1000
    multivalued: true
    alias: method_type
    owner: IntermicrobialInteraction
    domain_of:
    - IntermicrobialInteraction
    range: MethodType
    recommended: true
  reference:
    name: reference
    description: Persistent identifier (e.g. DOI or URL) to a resource, script, or
      article, documenting the method.
    from_schema: https://w3id.org/FAIR-MI/miiid-schema
    exact_mappings:
    - schema:url
    rank: 1000
    alias: reference
    owner: IntermicrobialInteraction
    domain_of:
    - IntermicrobialInteraction
    range: string
    required: true
  participant_outcomes:
    name: participant_outcomes
    description: Outcomes of each of the participants described in the interaction
      when known.
    from_schema: https://w3id.org/FAIR-MI/miiid-schema
    rank: 1000
    multivalued: true
    alias: participant_outcomes
    owner: IntermicrobialInteraction
    domain_of:
    - IntermicrobialInteraction
    range: ParticipantOutcome
    recommended: true
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/FAIR-MI/miiid-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: IntermicrobialInteraction
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/FAIR-MI/miiid-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: IntermicrobialInteraction
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/FAIR-MI/miiid-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: IntermicrobialInteraction
    domain_of:
    - NamedThing
    range: string